PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.2G212900.1.p
Common NamePRUPE_ppa007936mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family GATA
Protein Properties Length: 352aa    MW: 37666.2 Da    PI: 5.7828
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.2G212900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.12.1e-17254287134
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                         C +C  tkTp+WR gp g+ktLCnaCG++y++ +
  Prupe.2G212900.1.p 254 CLHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 287
                         99*****************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169922.4E-753342IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.451248284IPR000679Zinc finger, GATA-type
SMARTSM004011.8E-16248298IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.5E-14252285IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577167.13E-15252311No hitNo description
CDDcd002024.69E-14253300No hitNo description
PROSITE patternPS003440254279IPR000679Zinc finger, GATA-type
PfamPF003204.4E-15254287IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009845Biological Processseed germination
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MIGPNFIDEI DCGSFFDTID DLLDFPNDDV ESGLGPAPDC NAAFNNSLWP NQSGSLPAPN  60
DAVFSAGNSA SDLSAELSVP IEDIVQLEWL SNFVEDSFSG GSLTINKPDS FINKDTSHRQ  120
FQTSSPISVL DSSSSCSGDK NVPQSPGPVA APGKRGRARS KRPRPATFNP RSAIQLISPA  180
SSVTEAEGPQ AEPFLAPKIP SDSENFAESR PVIKIPKQAS GEQKKKKKLK VSLPLAPFEG  240
NQNSGPTQAA VRKCLHCEIT KTPQWRAGPM GPKTLCNACG VRYKSGRLFP EYRPAASPTF  300
VPSLHSNSHK KVLEMRTKGG ELVVFGETAT AMNETPELIP NTNSSISMDY M*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160164KRPRP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.70260.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007218229.10.0hypothetical protein PRUPE_ppa007936mg
TrEMBLM5XD360.0M5XD36_PRUPE; Uncharacterized protein
STRINGPOPTR_0010s23010.11e-146(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48873356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.21e-42GATA family protein